HL_6BOK_237

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_237 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.1265

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6BOK|1|B|G|2304
6BOK|1|B|A|2305
6BOK|1|B|C|2306
6BOK|1|B|G|2307
6BOK|1|B|G|2308
6BOK|1|B|A|2309
6BOK|1|B|A|2310
6BOK|1|B|A|2311
6BOK|1|B|U|2312

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L5