HL_6BU8_008

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BU8_008 not in the Motif Atlas

Homologous match to HL_5J7L_141

Geometric discrepancy: 0.1593

The information below is about HL_5J7L_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

6BU8|1|01|C|246
6BU8|1|01|G|247
6BU8|1|01|G|248
6BU8|1|01|C|249
6BU8|1|01|G|250
6BU8|1|01|A|251
6BU8|1|01|G|252

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L15

Chain 26

50S ribosomal protein L28

Chain 33

50S ribosomal protein L35

Chain X

Transfer RNA; tRNA