3D structure

PDB id
6BU8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome with S1 domains 1 and 2 (Class 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UUAG
Length
4 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6BU8_015 not in the Motif Atlas
Homologous match to HL_7A0S_017
Geometric discrepancy: 0.5328
The information below is about HL_7A0S_017
Detailed Annotation
Mini UNCG with extended bulge
Broad Annotation
Mini UNCG with extended bulge
Motif group
HL_90436.2
Basepair signature
cWW-F
Number of instances in this motif group
46

Unit IDs

6BU8|1|01|U|545
6BU8|1|01|U|546
6BU8|1|01|A|547
6BU8|1|01|G|548

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 20
50S ribosomal protein L21

Coloring options:


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