HL_6BU8_032

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

6BU8|1|01|U|1325, 6BU8|1|01|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BU8_032 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.1652

The information below is about HL_5J7L_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6BU8|1|01|G|1324
6BU8|1|01|U|1325
6BU8|1|01|U|1326
6BU8|1|01|A|1327
6BU8|1|01|A|1328
6BU8|1|01|U|1329
6BU8|1|01|C|1330

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L17

Chain 21

50S ribosomal protein L22