HL_6BU8_035

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

6BU8|1|01|A|1453, 6BU8|1|01|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BU8_035 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3603

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

6BU8|1|01|G|1450
6BU8|1|01|C|1451
6BU8|1|01|G|1452
6BU8|1|01|A|1453
6BU8|1|01|C|1454
6BU8|1|01|G|1455
6BU8|1|01|G|1456
6BU8|1|01|U|1457
6BU8|1|01|U|1458
6BU8|1|01|G|1459
6BU8|1|01|U|1460
6BU8|1|01|C|1461

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L17