HL_6BU8_048

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6BU8|1|01|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BU8_048 not in the Motif Atlas

Homologous match to HL_4WF9_046

Geometric discrepancy: 0.1337

The information below is about HL_4WF9_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6BU8|1|01|G|1949
6BU8|1|01|G|1950
6BU8|1|01|U|1951
6BU8|1|01|A|1952
6BU8|1|01|A|1953
6BU8|1|01|G|1954
6BU8|1|01|U|1955
6BU8|1|01|U|1956
6BU8|1|01|C|1957

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L14

Chain A

Small subunit ribosomal RNA; SSU rRNA