HL_6BU8_057

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BU8_057 not in the Motif Atlas

Homologous match to HL_4WF9_054

Geometric discrepancy: 0.116

The information below is about HL_4WF9_054

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

359

Unit IDs

6BU8|1|01|C|2374
6BU8|1|01|G|2375
6BU8|1|01|A|2376
6BU8|1|01|A|2377
6BU8|1|01|A|2378
6BU8|1|01|G|2379

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L18

Chain 25

50S ribosomal protein L27

Chain 31

50S ribosomal protein L33