HL_6BU8_060

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAAGUAGG

Length

10 nucleotides

Bulged bases

6BU8|1|01|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BU8_060 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.3619

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

6BU8|1|01|C|2527
6BU8|1|01|U|2528
6BU8|1|01|G|2529
6BU8|1|01|A|2530
6BU8|1|01|A|2531
6BU8|1|01|G|2532
6BU8|1|01|U|2533
6BU8|1|01|A|2534
6BU8|1|01|G|2535
6BU8|1|01|G|2536

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 08

50S ribosomal protein L6

Chain 34

50S ribosomal protein L36