3D structure

PDB id
6BU8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome with S1 domains 1 and 2 (Class 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
6BU8|1|01|G|2751, 6BU8|1|01|C|2755
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6BU8_065 not in the Motif Atlas
Homologous match to HL_4WF9_062
Geometric discrepancy: 0.1217
The information below is about HL_4WF9_062
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_53269.2
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
10

Unit IDs

6BU8|1|01|C|2745
6BU8|1|01|U|2746
6BU8|1|01|G|2747
6BU8|1|01|A|2748
6BU8|1|01|A|2749
6BU8|1|01|A|2750
6BU8|1|01|G|2751
6BU8|1|01|C|2752
6BU8|1|01|A|2753
6BU8|1|01|U|2754
6BU8|1|01|C|2755
6BU8|1|01|U|2756
6BU8|1|01|A|2757
6BU8|1|01|A|2758
6BU8|1|01|G|2759

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 08
50S ribosomal protein L6
Chain 12
50S ribosomal protein L13
Chain 34
50S ribosomal protein L36

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