HL_6BU8_067

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

6BU8|1|01|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BU8_067 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.163

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6BU8|1|01|G|2819
6BU8|1|01|A|2820
6BU8|1|01|A|2821
6BU8|1|01|G|2822
6BU8|1|01|A|2823
6BU8|1|01|C|2824
6BU8|1|01|G|2825
6BU8|1|01|A|2826
6BU8|1|01|C|2827

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 05

50S ribosomal protein L3

Chain 16

50S ribosomal protein L17