HL_6BU8_082

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

6BU8|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BU8_082 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1696

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6BU8|1|A|G|462
6BU8|1|A|U|463
6BU8|1|A|U|464
6BU8|1|A|A|465
6BU8|1|A|A|466
6BU8|1|A|U|467
6BU8|1|A|A|468
6BU8|1|A|C|469
6BU8|1|A|C|470

Current chains

Chain A

16S ribosomal RNA

Nearby chains