HL_6BU8_090

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BU8_090 not in the Motif Atlas

Homologous match to HL_4LFB_020

Geometric discrepancy: 0.1242

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6BU8|1|A|C|897
6BU8|1|A|G|898
6BU8|1|A|C|899
6BU8|1|A|A|900
6BU8|1|A|A|901
6BU8|1|A|G|902

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 01

Large subunit ribosomal RNA; LSU rRNA

Chain 04

50S ribosomal protein L2