HL_6BUW_028

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGGCAACG

Length

8 nucleotides

Bulged bases

6BUW|1|QA|C|1267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BUW_028 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3491

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6BUW|1|QA|C|1264
6BUW|1|QA|G|1265
6BUW|1|QA|G|1266
6BUW|1|QA|C|1267
6BUW|1|QA|A|1268
6BUW|1|QA|A|1269
6BUW|1|QA|C|1270
6BUW|1|QA|G|1271

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QM

30S ribosomal protein S13

Chain QS

30S ribosomal protein S19

Chain QU

30S ribosomal protein Thx