HL_6BUW_073

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

6BUW|1|RA|C|1493, 6BUW|1|RA|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BUW_073 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.2116

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6BUW|1|RA|G|1492
6BUW|1|RA|C|1493
6BUW|1|RA|A|1494
6BUW|1|RA|A|1495
6BUW|1|RA|A|1496
6BUW|1|RA|U|1497
6BUW|1|RA|C|1498

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2