HL_6BUW_085

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6BUW|1|RA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BUW_085 not in the Motif Atlas

Homologous match to HL_4WF9_046

Geometric discrepancy: 0.1793

The information below is about HL_4WF9_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6BUW|1|RA|G|1949
6BUW|1|RA|G|1950
6BUW|1|RA|U|1951
6BUW|1|RA|A|1952
6BUW|1|RA|A|1953
6BUW|1|RA|G|1954
6BUW|1|RA|U|1955
6BUW|1|RA|U|1956
6BUW|1|RA|C|1957

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RO

50S ribosomal protein L14