HL_6BUW_134

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCGAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BUW_134 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.326

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6BUW|1|XA|G|1164
6BUW|1|XA|C|1165
6BUW|1|XA|G|1166
6BUW|1|XA|A|1167
6BUW|1|XA|A|1169
6BUW|1|XA|A|1170
6BUW|1|XA|G|1171
6BUW|1|XA|C|1172

Current chains

Chain XA

16S rRNA

Nearby chains

Chain QJ

30S ribosomal protein S10

Chain XB

30S ribosomal protein S2

Chain XG

30S ribosomal protein S7