HL_6BZ6_181

3D structure

PDB id

6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.18 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

6BZ6|1|YA|C|1493, 6BZ6|1|YA|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BZ6_181 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.2033

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6BZ6|1|YA|G|1492
6BZ6|1|YA|C|1493
6BZ6|1|YA|A|1494
6BZ6|1|YA|A|1495
6BZ6|1|YA|A|1496
6BZ6|1|YA|U|1497
6BZ6|1|YA|C|1498

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YD

50S ribosomal protein L2