HL_6BZ7_145

3D structure

PDB id

6BZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BZ7_145 not in the Motif Atlas

Homologous match to HL_1QU2_003

Geometric discrepancy: 0.143

The information below is about HL_1QU2_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

6BZ7|1|XV|G|54
6BZ7|1|XV|U|55
6BZ7|1|XV|U|56
6BZ7|1|XV|C|57
6BZ7|1|XV|A|58
6BZ7|1|XV|A|59
6BZ7|1|XV|A|60
6BZ7|1|XV|U|61
6BZ7|1|XV|C|62

Current chains

Chain XV

tRNA fMet

Nearby chains

Chain YA

Large subunit ribosomal RNA; LSU rRNA

Chain YG

50S ribosomal protein L5

Chain YQ

50S ribosomal protein L16