HL_6C0F_011

3D structure

PDB id

6C0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C0F_011 not in the Motif Atlas

Homologous match to HL_5TBW_011

Geometric discrepancy: 0.2926

The information below is about HL_5TBW_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6C0F|1|1|U|382
6C0F|1|1|G|383
6C0F|1|1|A|384
6C0F|1|1|A|385
6C0F|1|1|A|386
6C0F|1|1|A|387

Current chains

Chain 1

Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA

Nearby chains

Chain I

Ribosome production factor 1

Chain P

60S ribosomal protein L17-A

Chain w

Ribosomal RNA-processing protein 15