HL_6C0F_022

3D structure

PDB id

6C0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAUAAU

Length

6 nucleotides

Bulged bases

6C0F|1|1|A|1887

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C0F_022 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1206

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6C0F|1|1|A|1883
6C0F|1|1|A|1884
6C0F|1|1|U|1885
6C0F|1|1|A|1886
6C0F|1|1|A|1887
6C0F|1|1|U|2349

Current chains

Chain 1

Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA

Nearby chains

Chain 8

Ribosomal RNA-processing protein 14

Chain v

Ribosome biogenesis protein SSF1