HL_6C0F_023

3D structure

PDB id

6C0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C0F_023 not in the Motif Atlas

Geometric match to HL_4V9F_070

Geometric discrepancy: 0.1417

The information below is about HL_4V9F_070

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6C0F|1|1|C|3025
6C0F|1|1|G|3026
6C0F|1|1|A|3027
6C0F|1|1|G|3028
6C0F|1|1|A|3029
6C0F|1|1|G|3030

Current chains

Chain 1

Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA

Nearby chains

Chain y

Eukaryotic translation initiation factor 6