HL_6C0F_025

3D structure

PDB id

6C0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6C0F|1|1|G|3116, 6C0F|1|1|C|3120

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C0F_025 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.2097

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6C0F|1|1|C|3110
6C0F|1|1|U|3111
6C0F|1|1|G|3112
6C0F|1|1|A|3113
6C0F|1|1|A|3114
6C0F|1|1|C|3115
6C0F|1|1|G|3116
6C0F|1|1|C|3117
6C0F|1|1|C|3118
6C0F|1|1|U|3119
6C0F|1|1|C|3120
6C0F|1|1|U|3121
6C0F|1|1|A|3122
6C0F|1|1|A|3123
6C0F|1|1|G|3124

Current chains

Chain 1

Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA

Nearby chains