HL_6C0F_032

3D structure

PDB id

6C0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

6C0F|1|2|U|125

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C0F_032 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.3597

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6C0F|1|2|G|124
6C0F|1|2|U|125
6C0F|1|2|A|126
6C0F|1|2|U|127
6C0F|1|2|U|128
6C0F|1|2|C|129

Current chains

Chain 2

5.8S rRNA

Nearby chains

Chain n

Pescadillo homolog

Chain s

Ribosome biogenesis protein ERB1