HL_6C4H_003

3D structure

PDB id

6C4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(PSU)GCUAACGU

Length

10 nucleotides

Bulged bases

6C4H|1|A|U|958, 6C4H|1|A|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C4H_003 not in the Motif Atlas

Homologous match to HL_5J7L_159

Geometric discrepancy: 0.0923

The information below is about HL_5J7L_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C4H|1|A|G|954
6C4H|1|A|PSU|955
6C4H|1|A|G|956
6C4H|1|A|C|957
6C4H|1|A|U|958
6C4H|1|A|A|959
6C4H|1|A|A|960
6C4H|1|A|C|961
6C4H|1|A|G|962
6C4H|1|A|U|963

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16