HL_6C4H_010

3D structure

PDB id

6C4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

6C4H|1|A|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C4H_010 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.0876

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C4H|1|A|C|2248
6C4H|1|A|U|2249
6C4H|1|A|G|2250
6C4H|1|A|OMG|2251
6C4H|1|A|G|2252
6C4H|1|A|G|2253
6C4H|1|A|C|2254
6C4H|1|A|G|2255
6C4H|1|A|G|2256

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27

Chain v

Peptide chain release factor RF2

Chain x

Transfer RNA; tRNA