HL_6C4H_012

3D structure

PDB id

6C4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C4H_012 not in the Motif Atlas

Homologous match to HL_7RQB_060

Geometric discrepancy: 0.1291

The information below is about HL_7RQB_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

6C4H|1|A|A|2471
6C4H|1|A|G|2472
6C4H|1|A|U|2473
6C4H|1|A|U|2474
6C4H|1|A|C|2475
6C4H|1|A|A|2476
6C4H|1|A|U|2477
6C4H|1|A|A|2478
6C4H|1|A|U|2479

Current chains

Chain A

23S rRNA

Nearby chains