3D structure

PDB id
6C4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Conformation of methylated GGQ in the peptidyl transferase center during translation termination
Experimental method
ELECTRON MICROSCOPY
Resolution
3.24 Å

Loop

Sequence
UUUUGUAUAA
Length
10 nucleotides
Bulged bases
6C4I|1|A|A|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6C4I_017 not in the Motif Atlas
Geometric match to HL_5J7L_150
Geometric discrepancy: 0.0692
The information below is about HL_5J7L_150
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

6C4I|1|A|U|566
6C4I|1|A|U|567
6C4I|1|A|U|568
6C4I|1|A|U|569
6C4I|1|A|G|570
6C4I|1|A|U|571
6C4I|1|A|A|572
6C4I|1|A|U|573
6C4I|1|A|A|574
6C4I|1|A|A|575

Current chains

Chain A
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L32
Chain D
50S ribosomal protein L3
Chain M
50S ribosomal protein L15
Chain R
50S ribosomal protein L20
Chain S
50S ribosomal protein L21

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2759 s