HL_6C4I_038

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

6C4I|1|A|A|1535

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C4I_038 not in the Motif Atlas

Homologous match to HL_5J7L_171

Geometric discrepancy: 0.3163

The information below is about HL_5J7L_171

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6C4I|1|A|C|1533
6C4I|1|A|U|1534
6C4I|1|A|A|1535
6C4I|1|A|C|1536
6C4I|1|A|G|1537
6C4I|1|A|G|1538

Current chains

Chain A

23S rRNA

Nearby chains