HL_6C4I_040

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

6C4I|1|A|A|1614, 6C4I|1|A|A|1616

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C4I_040 not in the Motif Atlas

Homologous match to HL_5J7L_173

Geometric discrepancy: 0.0767

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6C4I|1|A|C|1612
6C4I|1|A|G|1613
6C4I|1|A|A|1614
6C4I|1|A|C|1615
6C4I|1|A|A|1616
6C4I|1|A|C|1617
6C4I|1|A|6MZ|1618
6C4I|1|A|G|1619

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L34

Chain T

50S ribosomal protein L22