HL_6C4I_043

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

6C4I|1|A|U|1729, 6C4I|1|A|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C4I_043 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.2198

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

6C4I|1|A|C|1727
6C4I|1|A|C|1728
6C4I|1|A|U|1729
6C4I|1|A|C|1730
6C4I|1|A|G|1731
6C4I|1|A|C|1732
6C4I|1|A|G|1733

Current chains

Chain A

23S rRNA

Nearby chains