HL_6C4I_050

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

6C4I|1|A|A|2031, 6C4I|1|A|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C4I_050 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.0953

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6C4I|1|A|G|2027
6C4I|1|A|U|2028
6C4I|1|A|G|2029
6C4I|1|A|6MZ|2030
6C4I|1|A|A|2031
6C4I|1|A|G|2032
6C4I|1|A|A|2033
6C4I|1|A|U|2034
6C4I|1|A|G|2035
6C4I|1|A|C|2036

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain S

50S ribosomal protein L21