HL_6C4I_089

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CCCUUGAGG

Length

9 nucleotides

Bulged bases

6C4I|1|a|U|842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C4I_089 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3037

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6C4I|1|a|C|839
6C4I|1|a|C|840
6C4I|1|a|C|841
6C4I|1|a|U|842
6C4I|1|a|U|843
6C4I|1|a|G|844
6C4I|1|a|A|845
6C4I|1|a|G|846
6C4I|1|a|G|847

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain r

30S ribosomal protein S18