HL_6C4I_097

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

6C4I|1|a|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C4I_097 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.2691

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6C4I|1|a|U|1165
6C4I|1|a|G|1166
6C4I|1|a|A|1167
6C4I|1|a|U|1168
6C4I|1|a|A|1169
6C4I|1|a|A|1170
6C4I|1|a|A|1171

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain u

30S ribosomal protein S21