HL_6C4I_100

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

6C4I|1|a|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C4I_100 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.1066

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6C4I|1|a|G|1356
6C4I|1|a|A|1357
6C4I|1|a|U|1358
6C4I|1|a|C|1359
6C4I|1|a|A|1360
6C4I|1|a|G|1361
6C4I|1|a|A|1362
6C4I|1|a|A|1363
6C4I|1|a|U|1364
6C4I|1|a|G|1365
6C4I|1|a|C|1366

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S9

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14