HL_6C4I_103
3D structure
- PDB id
- 6C4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the peptidyl transferase center during translation termination
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 6C4I|1|x|C|16, 6C4I|1|x|U|17, 6C4I|1|x|G|18, 6C4I|1|x|G|19, 6C4I|1|x|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6C4I_103 not in the Motif Atlas
- Homologous match to HL_4LCK_001
- Geometric discrepancy: 0.2047
- The information below is about HL_4LCK_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6C4I|1|x|C|12
6C4I|1|x|A|13
6C4I|1|x|G|14
6C4I|1|x|C|15
6C4I|1|x|C|16
6C4I|1|x|U|17
6C4I|1|x|G|18
6C4I|1|x|G|19
6C4I|1|x|U|20
6C4I|1|x|A|21
6C4I|1|x|G|22
Current chains
- Chain x
- E-site or P-site tRNA fMet
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S ribosomal protein L5
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