HL_6C4I_111

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

6C4I|1|A|U|2797, 6C4I|1|A|A|2800

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C4I_111 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.2654

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6C4I|1|A|C|2795
6C4I|1|A|U|2796
6C4I|1|A|U|2797
6C4I|1|A|U|2798
6C4I|1|A|A|2799
6C4I|1|A|A|2800
6C4I|1|A|G|2801

Current chains

Chain A

23S rRNA

Nearby chains