HL_6C5L_008

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1527

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6C5L|1|AA|C|320
6C5L|1|AA|A|321
6C5L|1|AA|C|322
6C5L|1|AA|U|323
6C5L|1|AA|G|324
6C5L|1|AA|A|325
6C5L|1|AA|G|326
6C5L|1|AA|A|327
6C5L|1|AA|C|328
6C5L|1|AA|A|329
6C5L|1|AA|C|330
6C5L|1|AA|G|331
6C5L|1|AA|G|332
6C5L|1|AA|G|333

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AT

30S ribosomal protein S20