HL_6C5L_025

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCAGCGGUUCGGCCGG

Length

16 nucleotides

Bulged bases

6C5L|1|AA|A|1130, 6C5L|1|AA|U|1136, 6C5L|1|AA|C|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C5L|1|AA|C|1128
6C5L|1|AA|C|1129
6C5L|1|AA|A|1130
6C5L|1|AA|G|1131
6C5L|1|AA|C|1132
6C5L|1|AA|G|1133
6C5L|1|AA|G|1134
6C5L|1|AA|U|1135
6C5L|1|AA|U|1136
6C5L|1|AA|C|1137
6C5L|1|AA|G|1138
6C5L|1|AA|G|1139
6C5L|1|AA|C|1140
6C5L|1|AA|C|1141
6C5L|1|AA|G|1142
6C5L|1|AA|G|1143

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AI

30S ribosomal protein S9