HL_6C5L_037
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUCGAUUC
- Length
- 9 nucleotides
- Bulged bases
- 6C5L|1|AW|U|59, 6C5L|1|AW|U|60
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6C5L_037 not in the Motif Atlas
- Homologous match to HL_4QEI_003
- Geometric discrepancy: 0.3724
- The information below is about HL_4QEI_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6C5L|1|AW|G|53
6C5L|1|AW|U|54
6C5L|1|AW|U|55
6C5L|1|AW|C|56
6C5L|1|AW|G|57
6C5L|1|AW|A|58
6C5L|1|AW|U|59
6C5L|1|AW|U|60
6C5L|1|AW|C|61
Current chains
- Chain AW
- E-site tRNA PHE OR P-site tRNA PHE (unmodified bases)
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BC
- 50S ribosomal protein L1
Coloring options: