HL_6C5L_050

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

6C5L|1|BA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_050 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.1495

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6C5L|1|BA|G|382
6C5L|1|BA|U|383
6C5L|1|BA|U|384
6C5L|1|BA|C|385
6C5L|1|BA|G|386
6C5L|1|BA|U|387
6C5L|1|BA|G|388
6C5L|1|BA|G|389
6C5L|1|BA|A|390
6C5L|1|BA|G|391
6C5L|1|BA|C|392

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BP

50S ribosomal protein L15