HL_6C5L_061

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

6C5L|1|BA|A|781, 6C5L|1|BA|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_061 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1493

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

6C5L|1|BA|U|779
6C5L|1|BA|G|780
6C5L|1|BA|A|781
6C5L|1|BA|A|782
6C5L|1|BA|A|783
6C5L|1|BA|A|784
6C5L|1|BA|G|785

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L2