HL_6C5L_065

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_065 not in the Motif Atlas

Homologous match to HL_7RQB_028

Geometric discrepancy: 0.1408

The information below is about HL_7RQB_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6C5L|1|BA|G|978
6C5L|1|BA|G|979
6C5L|1|BA|A|980
6C5L|1|BA|A|981
6C5L|1|BA|C|982
6C5L|1|BA|A|983
6C5L|1|BA|A|984
6C5L|1|BA|C|985

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L30

Chain BU

50S ribosomal protein L20