HL_6C5L_066
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CUUAGAAGCAG
- Length
- 11 nucleotides
- Bulged bases
- 6C5L|1|BA|U|1066, 6C5L|1|BA|A|1070
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6C5L_066 not in the Motif Atlas
- Homologous match to HL_5J7L_161
- Geometric discrepancy: 0.2317
- The information below is about HL_5J7L_161
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19210.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6C5L|1|BA|C|1064
6C5L|1|BA|U|1065
6C5L|1|BA|U|1066
6C5L|1|BA|A|1067
6C5L|1|BA|G|1068
6C5L|1|BA|A|1069
6C5L|1|BA|A|1070
6C5L|1|BA|G|1071
6C5L|1|BA|C|1072
6C5L|1|BA|A|1073
6C5L|1|BA|G|1074
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain AY
- Peptide chain release factor 2
- Chain BK
- 50S ribosomal protein L11
- Chain BQ
- 50S ribosomal protein L16
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