HL_6C5L_071

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

6C5L|1|BA|G|1325, 6C5L|1|BA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_071 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.0715

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6C5L|1|BA|G|1324
6C5L|1|BA|G|1325
6C5L|1|BA|U|1326
6C5L|1|BA|C|1327
6C5L|1|BA|G|1328
6C5L|1|BA|U|1329
6C5L|1|BA|C|1330

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BR

50S ribosomal protein L17

Chain BW

50S ribosomal protein L22