HL_6C5L_073

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6C5L|1|BA|U|1396, 6C5L|1|BA|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_073 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1303

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6C5L|1|BA|G|1389
6C5L|1|BA|U|1390
6C5L|1|BA|U|1391
6C5L|1|BA|A|1392
6C5L|1|BA|A|1393
6C5L|1|BA|U|1394
6C5L|1|BA|A|1395
6C5L|1|BA|U|1396
6C5L|1|BA|U|1397
6C5L|1|BA|C|1398

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BX

50S ribosomal protein L23