HL_6C5L_078

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6C5L|1|BA|A|1614, 6C5L|1|BA|A|1616, 6C5L|1|BA|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_078 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1049

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6C5L|1|BA|C|1612
6C5L|1|BA|G|1613
6C5L|1|BA|A|1614
6C5L|1|BA|C|1615
6C5L|1|BA|A|1616
6C5L|1|BA|C|1617
6C5L|1|BA|A|1618
6C5L|1|BA|G|1619

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BW

50S ribosomal protein L22