HL_6C5L_104

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGCGUCAAGCC

Length

11 nucleotides

Bulged bases

6C5L|1|BA|A|2801

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_104 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1798

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6C5L|1|BA|G|2792
6C5L|1|BA|G|2793
6C5L|1|BA|C|2794
6C5L|1|BA|G|2795
6C5L|1|BA|U|2796
6C5L|1|BA|C|2799
6C5L|1|BA|A|2801
6C5L|1|BA|A|2801|||A
6C5L|1|BA|G|2802
6C5L|1|BA|C|2803
6C5L|1|BA|C|2804

Current chains

Chain BA

23S rRNA

Nearby chains