HL_6C5L_117

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

6C5L|1|CA|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_117 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.1754

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6C5L|1|CA|C|342
6C5L|1|CA|U|343
6C5L|1|CA|A|344
6C5L|1|CA|C|345
6C5L|1|CA|G|346
6C5L|1|CA|G|347

Current chains

Chain CA

16S rRNA

Nearby chains

Chain DO

50S ribosomal protein L14

Chain DT

50S ribosomal protein L19