HL_6C5L_120

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

6C5L|1|CA|C|470

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_120 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.1929

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6C5L|1|CA|C|458
6C5L|1|CA|G|460
6C5L|1|CA|A|461
6C5L|1|CA|C|470
6C5L|1|CA|G|471
6C5L|1|CA|A|472
6C5L|1|CA|G|473

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CP

30S ribosomal protein S16