HL_6C5L_121

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_121 not in the Motif Atlas

Geometric match to HL_1MFQ_001

Geometric discrepancy: 0.3221

The information below is about HL_1MFQ_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6C5L|1|CA|C|522
6C5L|1|CA|A|523
6C5L|1|CA|G|524
6C5L|1|CA|C|525
6C5L|1|CA|C|526
6C5L|1|CA|G|527

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CL

30S ribosomal protein S12